2024-07-27T15:17:52Z http://panmental.de/papers/publications.php

oai:Panmental:0 2012-05-23 Panmental

Genetic Regulatory Networks: Evolvable, Self-organizing Systems Knabe, Johannes F. science / artificial life / genetic regulatory networks Genetic Regulatory Networks: Evolvable, Self-organizing Systems Springer 2012-05-23 http://panmental.de/papers/publications.php?bibtex|0 html http://www.springer.com/engineering/computational+intelligence+and+complexity/book/978-3-642-30295-4 en All rights by the author(s)

oai:Panmental:1 2009-06-05 Panmental

Genetic Algorithms and their Application to in-silico Evolution of Genetic Regulatory Networks Knabe, Johannes F. Wegner, Katja Nehaniv, C. L. Schilstra, Maria J. science / artificial life Genetic Algorithms and their Application to in-silico Evolution of Genetic Regulatory Networks This chapter describes the use of genetic algorithms to evolve Genetic Regulatory Networks in general and discusses the application to the French Flag morphogenesis problem. The chapter has a lot of details and is aimed at biologists with little prior bio-computation knowledge. Humana Press 2009-06-05 http://panmental.de/papers/publications.php?bibtex|1 pdf http://www.springerlink.com/content/n67gw1647810r432 en All rights by the author(s)

oai:Panmental:2 2009-06-04 Panmental

Evolvability of Computational Genetic Regulatory Networks Johannes F. Knabe Science / Artificial Life / Genetic Regulatory Networks Evolvability of Computational Genetic Regulatory Networks submitted March 2009, passed defense with minor corrections June 2009 unknown 2009-06-04 http://panmental.de/papers/publications.php?bibtex|2 html http://phddetails.panmental.de en All rights by the author(s)

oai:Panmental:3 2008-05-23 Panmental

Do Motifs Reflect Evolved Function? - No Convergent Evolution of Genetic Regulatory Network Subgraph Topologies Johannes F. Knabe Chrystopher L. Nehaniv Maria J. Schilstra science / artificial life / genetic regulatory networks Do Motifs Reflect Evolved Function? - No Convergent Evolution of Genetic Regulatory Network Subgraph Topologies This is an extended version; A first version of this work was presented at IPCAT 2007 (SEVENTH INTERNATIONAL WORKSHOP ON INFORMATION PROCESSING IN CELL AND TISSUES, http://cms.brookes.ac.uk/computing/IPCAT/) Elsevier 2008-05-23 http://panmental.de/papers/publications.php?bibtex|3 pdf http://dx.doi.org/10.1016/j.biosystems.2008.05.012 en All rights by the author(s)

oai:Panmental:4 2008-04-20 Panmental

Evolution and Morphogenesis of Differentiated Multicellular Organisms: Autonomously Generated Diffusion Gradients for Positional Information Johannes F. Knabe Maria J. Schilstra Chrystopher L. Nehaniv science / artificial life / morphogenesis Evolution and Morphogenesis of Differentiated Multicellular Organisms: Autonomously Generated Diffusion Gradients for Positional Information MIT Press 2008-04-20 http://panmental.de/papers/publications.php?bibtex|4 pdf http://mitpress.mit.edu/books/chapters/0262287196chap42.pdf en All rights by the author(s)

oai:Panmental:5 2008-02-01 Panmental

Regulation of Gene Regulation - Smooth Binding with Dynamic Affinity affects Evolvability Johannes F. Knabe Chrystopher L. Nehaniv Maria J. Schilstra science / artificial life / genetic regulatory networks Regulation of Gene Regulation - Smooth Binding with Dynamic Affinity affects Evolvability IEEE Press 2008-02-01 http://panmental.de/papers/publications.php?bibtex|5 pdf http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=4630901&isnumber=4630767 en All rights by the author(s)

oai:Panmental:6 2007-10-26 Panmental

Genetic Regulatory Network models of Biological Clocks: Evolutionary history matters. Johannes F. Knabe Chrystopher L. Nehaniv Maria J. Schilstra Science / Artificial Life / Genetic Regulatory Networks Genetic Regulatory Network models of Biological Clocks: Evolutionary history matters. In the Artificial Life Journal's special issue on Systems Biology MIT Press 2007-10-26 http://panmental.de/papers/publications.php?bibtex|6 pdf http://www.mitpressjournals.org/doi/abs/10.1162/artl.2008.14.1.135 en All rights by the author(s)

oai:Panmental:7 2007-08-31 Panmental

Unruly Motifs - No Convergent Evolution of Network Topologies Johannes F. Knabe Chrystopher L. Nehaniv Maria J. Schilstra science / artificial life / genetic regulatory networks Unruly Motifs - No Convergent Evolution of Network Topologies http://cms.brookes.ac.uk/computing/IPCAT/ Librix 2007-08-31 http://panmental.de/papers/publications.php?bibtex|7 html http://panmental.de/IPCATmotifs en All rights by the author(s)

oai:Panmental:8 2007-02-10 Panmental

The NetBuilder' project: development of a tool for constructing, simulating, evolving, and analysing complex regulatory networks Wegner, Katja Knabe, Johannes Robinson, Mark Egri-Nagy, Attila Schilstra, Maria Science / Systems Biology / Genetic Regulatory Networks The NetBuilder' project: development of a tool for constructing, simulating, evolving, and analysing complex regulatory networks Katja's poster presentation at BioSysBio 2007: Systems Biology, Bioinformatics, Synthetic Biology BMC Systems Biology 2007-02-10 http://panmental.de/papers/publications.php?bibtex|8 html http://www.biomedcentral.com/1752-0509/1/S1/P72 en All rights by the author(s)

oai:Panmental:9 2006-12-01 Panmental

The Essential Motif that wasn't there: Topological and Lesioning Analysis of Evolved Genetic Regulatory Networks Johannes F. Knabe Chrystopher L. Nehaniv Maria J. Schilstra Science / Artificial Life / Genetic Regulatory Networks The Essential Motif that wasn't there: Topological and Lesioning Analysis of Evolved Genetic Regulatory Networks Omnipress 2006-12-01 http://panmental.de/papers/publications.php?bibtex|9 pdf http://ieeexplore.ieee.org/iel5/4218857/4218858/04218870.pdf?tp=&arnumber=4218870&isnumber=4218858 en All rights by the author(s)

oai:Panmental:10 2006-05-16 Panmental

Evolutionary Robustness of Differentiation in Genetic Regulatory Networks Johannes F. Knabe Chrystopher L. Nehaniv Maria J. Schilstra Science / Artificial Life / Genetic Regulatory Networks Evolutionary Robustness of Differentiation in Genetic Regulatory Networks Details to follow! Akademische Verlagsgesellschaft Aka, Berlin 2006-05-16 http://panmental.de/papers/publications.php?bibtex|10 pdf http://www.panmental.de/papers/GRNdifferentiationGWAL7.pdf en All rights by the author(s)

oai:Panmental:11 2006-02-14 Panmental

Synchronization of internal neural rhythms in multi-robotic systems Steffen Wischmann Martin Huelse Johannes F. Knabe Frank Pasemann Science / Dynamic Systems / Neural Synchronization Synchronization of internal neural rhythms in multi-robotic systems This paper is very similar to the one presented at ECAL 2005 but includes some result of the discussions there and fits nicely in this special issue of Adaptive Behaviour Adaptive Behavior 2006-02-14 http://panmental.de/papers/publications.php?bibtex|11 html http://adb.sagepub.com/cgi/reprint/14/2/117 en All rights by the author(s)

oai:Panmental:12 2005-12-16 Panmental

Evolving Biological Clocks using Genetic Regulatory Networks Johannes F. Knabe Chrystopher L. Nehaniv Maria J. Schilstra Tom Quick Science / Artificial Life / Genetic Regulatory Networks Evolving Biological Clocks using Genetic Regulatory Networks Of general interest might be the extension of an old GRN model with a conjunction like logic. Instead of only adding input to a gene (node) up, input interactions might be synergistic additionally - e.g. >>if one input is not present the gene is blocked completely<<. MIT Press/Bradford Books 2005-12-16 http://panmental.de/papers/publications.php?bibtex|12 pdf http://www.panmental.de/papers/BioClockGRNsALife10.pdf en All rights by the author(s)

oai:Panmental:13 2005-06-01 Panmental

Synchronization of internal neural rhythms in multi-robotic systems Steffen Wischmann Martin Huelse Johannes Knabe Frank Pasemann Science / Dynamic Systems / Neural Synchronization Synchronization of internal neural rhythms in multi-robotic systems Includes part of the work I did while doing a placement at the Intelligent Dynamics group of the Fraunhofer Institute. http://www.informatics.sussex.ac.uk/activate.d/workshop@ecal2005/programme.html unknown 2005-06-01 http://panmental.de/papers/publications.php?bibtex|13 pdf http://www.panmental.de/papers/SynchronECAL05.pdf en All rights by the author(s)

oai:Panmental:14 2005-03-01 Panmental

Kooperatives Reinforcement Lernen in Multiagentensystemen Johannes Knabe Science / Reinforcement Learning / Cooperative Kooperatives Reinforcement Lernen in Multiagentensystemen The thesis I wrote to receive my BSc degree. Results worked quite nice at RoboCup German Open 2005, where our Brainstormers placed first. In German with an English abstract only. unknown 2005-03-01 http://panmental.de/papers/publications.php?bibtex|14 pdf http://www.panmental.de/papers/CooperativeRLinMAS.pdf url = http://www.panmental.de/papers/CooperativeRLinMAS de All rights by the author(s)

oai:Panmental:15 2005-02-01 Panmental

Brainstormers 2D - Team Description 2005 Martin Riedmiller Thomas Gabel Johannes Knabe Hauke Strasdat Science / Reinforcement Learning / Robotic Soccer Brainstormers 2D - Team Description 2005 Appeared on the CD coming with the RoboCup World Championship 2005 proceedings LNCS. Springer 2005-02-01 http://panmental.de/papers/publications.php?bibtex|15 pdf http://www.panmental.de/papers/BSTeam05.pdf en All rights by the author(s)

oai:Panmental:16 2004-08-01 Panmental

Filtering Spam E-Mail with Support Vector Machines Christian Kaul Johannes Knabe Tobias Lang Volker Sperschneider Science / Neural Nets / Support Vector Machines Filtering Spam E-Mail with Support Vector Machines Report on a very successful course project which was presented on computer fair CeBit 2004. Source code available at: http://sourceforge.net/projects/spamstop/ PICS - Publications of the Institute of Cognitive Science, University of Osnabrueck 2004-08-01 http://panmental.de/papers/publications.php?bibtex|16 pdf http://panmental.de/papers/SVMSpamStop.pdf en All rights by the author(s)