Zola, E. Das Geld. (no bibtex) (amazon: .co.uk .com .de ) |
Toledo, C. de. Goodbye Tristesse. (no bibtex) (amazon: .co.uk .com .de) |
Kunkel, B. Unentschlossen. (no bibtex) (amazon: .co.uk .com .de) |
Fitzgerald, F. S. The great Gatsby. (no bibtex) (amazon: .co.uk .com .de) |
Wieland, Chr. M. Geschichte des Agathon. (no bibtex) (amazon: .co.uk .com .de) |
Ooyen, A. v. Competition in the development of nerve connections: a review of models. In Network, 12 (1): R1-47, 2001. ( link) ( bibtex) |
Ooyen, A. and Willshaw, D. J. Competition for neurotrophic factor in the development of nerve connections. In Proceedings of the Royal Society of London. Series B: Biological Sciences, 266 (1422): 883-892, 1999. ( link) ( bibtex) |
Godfrey, K. B., Eglen, S. J. and Swindale, N. V. A Multi-Component Model of the Developing Retinocollicular Pathway Incorporating Axonal and Synaptic Growth. In PLoS Comput Biol, 5 (12), 2009. ( link) ( bibtex) |
Coetzee, J. M. Sommer des Lebens. (no bibtex) (amazon: .co.uk .com .de) |
Lem, S. Der futurologische Kongress. (no bibtex) (amazon: .co.uk .com .de) |
Fromm, E. Haben oder Sein. (no bibtex) (amazon: .co.uk .com .de) |
Ooyen, A. v., Pelt, J. v. and Corner, M. A. Implications of activity dependent neurite outgrowth for neuronal morphology and network development. In Journal of Theoretical Biology, 172 (1): 63-82, 1995. ( link) ( bibtex) |
London, J. The Iron Heel. (no bibtex) (amazon: .co.uk .com .de) |
Almqvist, C. J. L. Die Woche mit Sara. (no bibtex) (amazon: .co.uk .com .de) |
Popper, K. R. and Eccles, J. C. The Self and its Brain: An Argument for Interactionism. (no bibtex) (amazon: .co.uk .com .de) |
Huxley, A. Eiland. (no bibtex) (amazon: .co.uk .com .de) |
Voltaire. Romane: Zadig oder Das Geschick - Candide oder Der Optimismus - Der Freimütige oder Das Naturkind. (no bibtex) (amazon: .co.uk .com .de) |
Keller, G. Martin Salander. (no bibtex) (amazon: .co.uk .com .de) |
Ibsen, H. John Gabriel Borkman. (no bibtex) (amazon: .co.uk .com .de) |
Kaestner, E. Fabian. (no bibtex) (amazon: .co.uk .com .de) |
Musil, R. Der Mann ohne Eigenschaften. (no bibtex) (amazon: .co.uk .com .de) |
West, A. E., Griffith, E. C. and Greenberg, M. E. Regulation of transcription factors by neuronal activity. In Nat Rev Neurosci, 3 (12): 921-931, 2002. ( link) ( bibtex) |
Kitano, H. A simple model of neurogenesis and cell differentiation based on evolutionary large-scale chaos. In Artificial Life, 2: 79-99, 1995. ( bibtex) |
Kandel, E. R. The Molecular Biology of Memory Storage: A Dialogue Between Genes and Synapses. In Science, 294 (5544): 1030-1038, 2001. ( bibtex) |
Goethe, J. W. Wilhelm Meisters Wanderjahre. (no bibtex) (amazon: .co.uk .com .de) |
Hesse, H. Demian. (no bibtex) (amazon: .co.uk .com .de) |
Weinberg, S. Die ersten drei Minuten. (no bibtex) (amazon: .co.uk .com .de) |
Samuelson, P.A. and Nordhaus, W.D. Volkswirtschaftslehre. (no bibtex) (amazon: .co.uk .com .de) |
Hartmann, G. B. Volks- und Weltwirtschaft. (no bibtex) (amazon: .co.uk .com .de) |
Goethe, J.W. Die Wahlverwandtschaften. (no bibtex) (amazon: .co.uk .com .de) |
Stifter, A. Der Nachsommer. (no bibtex) (amazon: .co.uk .com .de) |
Flaubert, G. Die Erziehung der Gefühle. (no bibtex) (amazon: .co.uk .com .de) |
Sammeth, M., Foissac, S. and Guigo, R. A General Definition and Nomenclature for Alternative Splicing Events. In PLoS Comput Biol, 4 (8): e1000147, 2008. ( bibtex) |
Strogatz, S. H. Nonlinear Dynamics and Chaos. Addison Wesley, Reading, MA, 1994. ( bibtex) (amazon: .co.uk .com .de) |
Weber, M. Politik als Beruf. (no bibtex) (amazon: .co.uk .com .de) |
Schilstra, M. J., Martin, S. R. and Keating, S. M. Methods for simulating the dynamics of complex biological processes. In Methods in cell biology, 84: 807-842, 2008. ( bibtex) |
Sontheimer, K. et.al. Grundzüge des politischen Systems Deutschlands. (no bibtex) (amazon: .co.uk .com .de) |
Rousseau, J. Emile oder Über der Erziehung. (no bibtex) (amazon: .co.uk .com .de) |
Lenski, R. E., Barrick, J. E. and Ofria, C. Balancing Robustness and Evolvability. In PLoS Biology, 4 (12): e428+, 2006. ( link) ( bibtex) |
Goethe, J.W. Wilhelm Meisters Lehrjahre. (no bibtex) (amazon: .co.uk .com .de) |
Bryson, B. Eine kurze Geschichte von fast allem. (no bibtex) (amazon: .co.uk .com .de) |
Aurel, M. Selbstbetrachtungen. (no bibtex) (amazon: .co.uk .com .de) |
Miller, J. F. Evolving developmental programs for adaptation, morphogenesis, and self-repair. In Proceeding of ECAL 2003, pages 256-265, Springer, 2003. ( bibtex) |
Joachimczak, M. and Wrobel, B. Evo-devo in silico: a model of a gene network regulating multicellular development in 3D space with artificial physics. In Artificial Life XI: Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pages 297-304, MIT Press, Cambridge, MA, 2008. ( file) ( bibtex) |
Fleischer, K. and Barr, A. H. A Simulation Testbed for the Study of Multicellular Development: The Multiple Mechanisms of Morphogenesis. In Artificial Life III, pages 389-416, 1992. ( bibtex) |
Salazar-Ciudad, I., Newman, S. A. and Sole, R. V. Phenotypic and dynamical transitions in model genetic networks I. Emergence of patterns and genotype-phenotype relationships. ( bibtex) |
Francois, P. and Hakim, V. Design of genetic networks with specified functions by evolution in silico. In Proc Natl Acad Sci U S A, 101 (2): 580-585, 2004. ( bibtex) |
Drennan, B. and Beer, R. D. Evolution of repressilators using a biologically-motivated model of gene expression. In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems, pages 22-27, The MIT Press (Bradford Books), 2006. ( bibtex) |
Chaves, M., Albert, R. and Sontag, E. D. Robustness and fragility of Boolean models for genetic regulatory networks. In Journal of Theoretical Biology, 235: 431-449, 2005. ( link) ( bibtex) |
Bornholdt, S. Systems Biology: Less Is More in Modeling Large Genetic Networks. In Science, 310 (5747): 449-451, 2005. ( link) ( bibtex) |
Albert, R. and Othmer, H. G. The topology of the regulatory interactions predics the expression pattern of the segment polarity genes in Drosophila melanogaster. In Journal of Theoretical Biology, 223, 2003. ( bibtex) |
Tyson, J. J., Albert, R., Goldbeter, A., Ruoff, P. and Sible, J. Biological switches and clocks. In Journal of The Royal Society Interface, 5 (0): S1-S8, 2008. ( bibtex) |
Hallinan, J. and Wiles, J. Evolving genetic regulatory networks using an artificial genome. In Second Asia-Pacific Bioinformatics Conference (APBC2004). Volume 29 of CRPIT., Dunedin, New Zealand, ACS (2004) 291, pages 291-296, 2004. ( link) ( bibtex) |
Crombach, A. and Hogeweg, P. Evolution of Evolvability in Gene Regulatory Networks. In PLoS Comput Biol, 4 (7), 2008. ( link) ( bibtex) |
Stricker, J., Cookson, S., Bennett, M. R., Mather, W. H., Tsimring, L. S. and Hasty, J. A fast, robust and tunable synthetic gene oscillator. In Nature, 2008. ( link) ( bibtex) |
Carroll, S. B. Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution. In Cell, 134 (1): 25-36, 2008. ( link) ( bibtex) |
Maugham, S. W. The Razor's Edge. (no bibtex) (amazon: .co.uk .com .de) |
Forgacs, G. and Newman, S. Biological physics of the developing embryo. Cambridge University Press, 2005. ( bibtex) (amazon: .co.uk .com .de) |
Black, D. L. . Mechanisms of alternative pre-messenger RNA splicing. In Annu Rev Biochem, 72: 291-336, 2003. ( link) ( bibtex) |
Ingram, P. J., Stumpf, M. P. and Stark, J. Network motifs: structure does not determine function. In BMC genomics, 7 (1): 108+, 2006. ( link) ( bibtex) |
Sengupta, A. M., Djordjevic, M. and Shraiman, B. I. Specificity and robustness in transcription control networks. In Proc Natl Acad Sci U S A, 99 (4): 2072-2077, 2002. ( link) ( bibtex) |
Bonner, J. T. First signals: The evolution of multicellular development. Princeton University Press, Princeton, 2001. ( bibtex) (amazon: .co.uk .com .de) |
Steinberg, M. S. Adhesion in Development: An Historical Overview. In Developmental Biology, 180 (2): 377-388, 1996. ( bibtex) |
Nehaniv, C. L. Evolvability. In Biosystems, 69 (2-3): 77-81, 2003. ( bibtex) |
Huynen, M. A., Stadler, P. F. and Fontana, W. Smoothness within ruggedness: the role of neutrality in adaptation. In Proc Natl Acad Sci U S A, 93 (1): 397-401, 1996. ( link) ( bibtex) |
Pfeifer, R., Lungarella, M. and Iida, F. Self-Organization, Embodiment, and Biologically Inspired Robotics. In Science, 318 (5853): 1088-1093, 2007. ( link) ( bibtex) |
Kandel, E. R. Principles of Neural Science. McGraw-Hill Education, 2000. ( bibtex) (amazon: .co.uk .com .de) |
Goodwin, B. How the Leopard Changed Its Spots - The Evolution of Complexity. (no bibtex) (amazon: .co.uk .com .de) |
Hosseini, K. Drachenlaeufer. (no bibtex) (amazon: .co.uk .com .de) |
Isalan, M., Lemerle, C., Michalodimitrakis, K., Horn, C., Beltrao, P., Raineri, E., Garriga-Canut, M. and Serrano, L. Evolvability and hierarchy in rewired bacterial gene networks. In Nature, 452 (7189): 840-845, 2008. ( link) ( bibtex) |
Liu, W.F. and Chen, C.S. Cellular and multicellular form and function. In Adv Drug Deliv Rev, 59: 1319-1328, 2007. ( bibtex) |
Huang, S. and Ingber, D. E. Shape-Dependent Control of Cell Growth, Differentiation, and Apoptosis: Switching between Attractors in Cell Regulatory Networks. In Experimental Cell Research, 261 (1): 91-103, 2000. ( file) ( bibtex) |
Folkman, J. and Moscona, A. Role of cell shape in growth control. In Nature, 273 (5661): 345-349, 1978. ( link) ( bibtex) |
Chu, D. Evolving genetic regulatory networks for systems biology. In IEEE Congress on Evolutionary Computation (CEC) 2007, pages 875-882, 2007. ( bibtex) |
Turing, A. M. The Chemical Basis of Morphogenesis. In Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 237 (641): 37-72, 1952. ( bibtex) |
Federici, D. Increasing evolvability for developmental programs. In proceeding of the Workshop on Regeneration and Learning in Developmental Systems, WORLDS 2004, 2004. ( link) ( bibtex) |
Devert, A., Bredeche, N. and Schoenauer, M. Robust multi-cellular developmental design. In GECCO '07: Proceedings of the 9th annual conference on Genetic and evolutionary computation, pages 982-989, ACM, 2007. ( file) ( bibtex) |
Zajac, M., Jones, G. L. and Glazier, J. A. Simulating convergent extension by way of anisotropic differential adhesion. In Journal of Theoretical Biology, 222 (2): 247-259, 2003. ( link) ( bibtex) |
Anderson, A. R.A., Chaplain, M. and Rejniak, K. A., ed. Single-Cell-Based Models in Biology and Medicine. Birkhaeuser, 2007. ( file) ( bibtex) (amazon: .co.uk .com .de) |
Dan, D., Mueller, C., Chen, K. and Glazier, J. A. Solving the advection-diffusion equations in biological contexts using the cellular Potts model. In Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), 72 (4): 041909, 2005. ( link) ( bibtex) |
Maupassant, G. de. A Woman's Life. (no bibtex) (amazon: .co.uk .com .de) |
Merks, R. M. H. and Glazier, J. A. A cell-centered approach to developmental biology. In Physica A: Statistical Mechanics and its Applications, 352 (1): 113-130, 2005. ( bibtex) |
Merks, R. M. H. , Brodsky, S. V., Goligorsky, M. S., Newman, S. A. and Glazier, J. A. Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling. In Dev Biol, 289: 44-54, 2006. ( bibtex) |
Cickovski, T., Aras, K., Swat, M., Merks, R. M. H., Glimm, T., Hentschel, H. G. E., Alber, M. S., Glazier, J. A., Newman, S. A. and Izaguirre, J. A. From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development. In Computing in Science and Engg., 9 (4): 50-60, 2007. ( bibtex) |
Marquez, G. G. One Hundred Years of Solitude. (no bibtex) (amazon: .co.uk .com .de) |
Hogeweg, P. Shapes in the Shadow: Evolutionary Dynamics of Morphogenesis. In Artificial Life, 6 (1): 85-101, 2000. ( file) ( bibtex) |
Glazier, J. A. and Graner, F. Simulation of the differential adhesion driven rearrangement of biological cells. In Phys. Rev. E, 47 (3): 2128-2154, 1993. ( bibtex) |
Bernstein, P. L. Against the gods - the remarkable story of risk. (no bibtex) (amazon: .co.uk .com .de) |
Hesse, H. Unterm Rad. (no bibtex) (amazon: .co.uk .com .de) |
Arendt, H. Vita activa (The human condition). (no bibtex) (amazon: .co.uk .com .de) |
Meinhardt, H. Space-dependent cell determination under the control of a morphogen gradient. In Journal of Theoretical Biology, 74 (2): 307-321, 1978. ( link) ( file) ( bibtex) |
Meinhardt, H. A boundary model for pattern formation in vertebrate limbs. In J Embryol Exp Morphol, 76, 1983. ( link) ( file) ( bibtex) |
Eigen, M. Stufen zum Leben. (no bibtex) (amazon: .co.uk .com .de) |
Conrad, M. The geometry of evolution. In Biosystems, 24 (1): 61-81, 1990. ( link) ( bibtex) |
Davidson, E. H. Spatial mechanisms of gene regulation in metazoan embryos. In Development, 113 (1): 1-26, 1991. ( link) ( bibtex) |
Lee, H. To Kill a Mockingbird. (no bibtex) (amazon: .co.uk .com .de) |
West-Eberhard, M. J. Evolution in the light of developmental and cell biology, and vice versa. In Proceedings of the National Academy of Sciences, 95 (15): 8417-8419, 1998. ( link) ( bibtex) |
Kirschner, M. and Gerhart, J. Evolvability. In Proc Natl Acad Sci U S A, 95 (15): 8420-8427, 1998. ( link) ( bibtex) |
Gerhart, J. C. and Kirschner, M. Cells, Embryos And Evolution. Blackwell Publishing, 1997. ( bibtex) (amazon: .co.uk .com .de) |
Rasmussen, S., Chen, L., Deamer, D., Krakauer, D. C., Packard, N. H., Stadler, P. F. and Bedau, M. A. EVOLUTION: Transitions from Nonliving to Living Matter. In Science, 303 (5660): 963-965, 2004. ( file) ( bibtex) |
Wilke, C. O. Quasispecies theory in the context of population genetics. In BMC Evolutionary Biology, 5: 44, 2005. ( link) ( bibtex) |
Weiss, K. M. The phenogenetic logic of life. In Nature Reviews Genetics, 6 (1): 36-45, 2005. ( link) ( bibtex) |
Carroll, S. B. Chance and necessity: the evolution of morphological complexity and diversity. In Nature, 409 (6823): 1102-1109, 2001. ( link) ( bibtex) |
Mjolsness, E., Sharp, D.H. and Reinitz, J. A connectionist model of development. In J Theor Biol., 1991. ( file) ( bibtex) |
Harold, F. M. Molecules into Cells: Specifying Spatial Architecture. In Microbiol. Mol. Biol. Rev., 69 (4): 544-564, 2005. ( link) ( bibtex) |
Gilbert, S.F., Opitz, J.M. and Raff, R.A. Resynthesizing evolutionary and developmental biology. In Dev Biol, 173 (2): 357-72, 1996. ( file) ( bibtex) |
Wolpert, L. One hundred years of positional information. In Trends in Genetics: 359-364, 1996. ( bibtex) |
Volkert, G. L. and Conrad, M. The Role of Weak Interactions in Biological Systems: the Dual Dynamics Model. In Journal of Theoretical Biology, 193 (2): 287-306, 1998. ( link) ( bibtex) |
Monk, N. A. Cell communities and robustness in development. In Bull Math Biol, 59 (6): 1183-9, 1997. ( bibtex) |
Jaeger, J. and Reinitz, J. On the dynamic nature of positional information. In BioEssays, 28 (11): 1102-1111, 2006. ( link) ( bibtex) |
Gould, S. J. and Lewontin, R. C. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme. In Proc R Soc Lond B Biol Sci, 205 (1161): 581-598, 1979. ( file) ( bibtex) |
Juenger, E. Eumeswil. (no bibtex) (amazon: .co.uk .com .de) |
Bukowski, C. Post Office. (no bibtex) (amazon: .co.uk .com .de) |
Flaubert, G. Madame Bovary. (no bibtex) (amazon: .co.uk .com .de) |
Kauffman, S. Investigations. (no bibtex) (amazon: .co.uk .com .de) |
Noort, V. v., Snel, B. and Huynen, M. The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model. In EMBO Reports, 5 (3): 280-284, 2004. ( link) ( bibtex) |
Cordero, O.X. and Hogeweg, P. Feed Forward Loop Circuits as a Side Effect of Genome Evolution. In Mol Biol Evol, 2006. ( file) ( bibtex) |
Bellamy, E. Looking Backward 2000-1887. (no bibtex) (amazon: .co.uk .com .de) |
Rodrigo, G., Carrera, J. and Jaramillo, A. Evolutionary mechanisms of circadian clocks. In Central European Journal of Biology, 2 (2): 233-253, 2007. ( link) ( bibtex) |
Gardner, T. S., Cantor, C. R. and Collins, J. J. Construction of a genetic toggle switch in Escherichia coli. In Nature, 403 (6767): 339-342, 2000. ( link) ( bibtex) |
Ciliberti, S., Martin, O. C. and Wagner, A. Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology. In PLoS Computational Biology, 3 (2): e15+, 2007. ( link) ( bibtex) |
Orwell, G. Coming Up for Air. (no bibtex) (amazon: .co.uk .com .de) |
Maugham, W. S. Of Human Bondage. (no bibtex) (amazon: .co.uk .com .de) |
Mikhailov, A.S. and Hess, B. Self-Organization in Living Cells: Networks of Protein Machines and Nonequilibrium Soft Matter. In Journal of Biological Physics, 28 (4): 655-672, 2002. ( link) ( bibtex) |
Hess, B. and Mikhailov, A. Self-Organization in Living Cells. In Science, 264: 223-224, 1994. ( bibtex) |
Maynard-Smith, J. Shaping Life - Genes, Embryos and Evolution. Weidenfeld and Nicolson, London, 1998. ( bibtex) (amazon: .co.uk .com .de) |
Mayer, B., Koehler, G. and Rasmussen, S. Simulation and dynamics of entropy-driven, molecular self-assembly processes. In Phys. Rev. E, 55 (4): 4489-4499, 1997. ( bibtex) |
Madina, D., Ono, N. and Ikegami, T. Cellular Evolution in a 3D Lattice Artificial Chemistry. In ECAL, pages 59-68, 2003. ( file) ( bibtex) |
Zhou, T., Carlson, J. M. and Doyle, J. Evolutionary dynamics and highly optimized tolerance. In Journal of Theoretical Biology, 236 (4): 438-447, 2005. ( file) ( bibtex) |
Kauffman, S. Question 1: Origin of Life and the Living State. In Origins of Life and Evolution of Biospheres, 37 (4): 315-322, 2007. ( bibtex) |
Kandel, E. R. In Search of Memory : the emergence of a new science of mind. Norton, New York, N.Y., 2006. ( bibtex) (amazon: .co.uk .com .de) |
Matos, A. M. de, Suzuki, R. and Arita, T. Heterochrony and evolvability in neural network development. In Artificial Life and Robotics, 11 (2): 175-182, 2007. ( file) ( bibtex) |
Lungarella, M. and Sporns, O. Mapping Information Flow in Sensorimotor Networks. In PLoS Computational Biology, 2 (10): e144+, 2006. ( link) ( bibtex) |
Russell, B. Authority and the Individual. (no bibtex) (amazon: .co.uk .com .de) |
Russell, B. The Conquest of Happiness. (no bibtex) (amazon: .co.uk .com .de) |
Robbins, T. Panaroma. (no bibtex) (amazon: .co.uk .com .de) |
Hinman, V. F., Nguyen, A. T., Cameron, R. A. and Davidson, E. H. Developmental gene regulatory network architecture across 500 million years of echinoderm evolution. In PNAS, 100 (23): 13356-13361, 2003. ( link) ( file) ( bibtex) |
Barabasi, A. L. and Oltvai, Z. N. Network biology: understanding the cell's functional organization. In Nat Rev Genet, 5 (2): 101-113, 2004. ( link) ( file) ( bibtex) |
Gross, D. and McMullin, B. Is it the right ansatz?. In Artif. Life, 7 (4): 355-365, 2002. ( file) ( bibtex) |
Balcan, D., Kabakcioglu, A., Mungan, M. and Erzan, A. The Information Coded in the Yeast Response Elements Accounts for Most of the Topological Properties of Its Transcriptional Regulation Network. In PLoS ONE, 2 (6): e501, 2007. ( file) ( bibtex) |
Walser, M. Ein fliehendes Pferd. (no bibtex) (amazon: .co.uk .com .de) |
Voltaire. Candide, or Optimism. (no bibtex) (amazon: .co.uk .com .de) |
Kirchner, B. and Dath, D. Schwester Mitternacht. (no bibtex) (amazon: .co.uk .com .de) |
Hoelderlin, F. Hyperion. (no bibtex) (amazon: .co.uk .com .de) |
Goldt, M. Die Kugeln in unseren Koepfen. (no bibtex) (amazon: .co.uk .com .de) |
Dath, D. Schoener rechnen. (no bibtex) (amazon: .co.uk .com .de) |
Coetzee, J. M. Die jungen Jahre. (no bibtex) (amazon: .co.uk .com .de) |
Marias, J. A Heart So White. (no bibtex) (amazon: .co.uk .com .de) |
Gavalda, A. Someone I Loved. (no bibtex) (amazon: .co.uk .com .de) |
Roth, P. The Human Stain. (no bibtex) (amazon: .co.uk .com .de) |
Wuchty, S., Oltvai, Z. N. and Barabasi, A. L. Evolutionary conservation of motif constituents in the yeast protein interaction network. In Nat Genet, 35 (2): 176-179, 2003. ( link) ( bibtex) |
Artzy-Randrup, Y., Fleishman, S. J., Ben-Tal, N. and Stone, L. Comment on "Network Motifs: Simple Building Blocks of Complex Networks" and "Superfamilies of Evolved and Designed Networks". In Science, 305 (5687): 1107c-, 2004. ( file) ( bibtex) |
Mazurie, A., Bottani, S. and Vergassola, M. An evolutionary and functional assessment of regulatory network motifs. In Genome Biol, 6 (4), 2005. ( file) ( bibtex) |
Weitz, J. S., Benfey, P. N. and Wingreen, N. S. Evolution, Interactions, and Biological Networks. In PLoS Biology, 5 (1): e11+, 2007. ( link) ( bibtex) |
Wagner, A. Energy Constraints on the Evolution of Gene Expression. In Molecular Biology and Evolution, 22 (6): 1365-1374, 2005. ( link) ( bibtex) |
Burggren, W. W. and Monticino, M. G. Assessing physiological complexity. In J Exp Biol, 208 (Pt 17): 3221-3232, 2005. ( link) ( bibtex) |
Meyers, L. A., Ancel, F. D. and Lachmann, M. Evolution of Genetic Potential. In PLoS Computational Biology, 1 (3), 2005. ( link) ( bibtex) |
Schlosser, G. and Wagner, G. P., ed. Modularity in Development and Evolution. University Of Chicago Press, 2004. ( bibtex) (amazon: .co.uk .com .de) |
Hillis, W. D. Co-evolving parasites improve simulated evolution as an optimization procedure. In Phys. D, 42 (1-3): 228-234, 1990. ( link) ( bibtex) |
Zykov, V., Bongard, J. and Lipson, H. Co-evolutionary Variance Can Guide Physical Testing in Evolutionary System Identification. In EH '05: Proceedings of the 2005 NASA/DoD Conference on Evolvable Hardware, pages 213-220, IEEE Computer Society, 2005. ( link) ( file) ( bibtex) |
Fontaneto, D., Herniou, E. A., Boschetti, C., Caprioli, M., Melone, G., Ricci, C. and Barraclough, T. G. Independently Evolving Species in Asexual Bdelloid Rotifers. In PLoS Biology, 5 (4): e87+, 2007. ( link) ( bibtex) |
Meinhardt, H. Models of Biological Pattern Formation. Academic Press, London, 1982. ( file) ( bibtex) (amazon: .co.uk .com .de) |
Harding, S. and Miller, J. F. A comparison between developmental and direct encodings. An update of the GECCO 2006 Paper 'The Dead State'. ( file) ( bibtex) |
Eggenberger-Hotz, P. Evolving Morphologies of Simulated 3d Organisms Based on Differential Gene Expression. In Proceedings of the 4th European Conference on Artificial Life (ECAL97), MIT Press, Cambridge, MA, 1997. ( file) ( bibtex) |
Furusawa, C. and Kaneko, K. Emergence of Multicellular Organisms with Dynamic Differentiation and Spatial Pattern. In Artificial Life, 4 (1): 79-93, 1998. ( file) ( bibtex) |
Wolpert, L., Jessell, T., Lawrence, P., Meyerowitz, E., Robertson, E. and Smith, J. Principles of Development. Oxford University Press, Oxford, 2007. ( bibtex) (amazon: .co.uk .com .de) |
Volkenstein, M.V. Physics and Biology. Academic Press, New York, 1982. ( bibtex) (amazon: .co.uk .com .de) |
Smith, J. M. Evolution and the Theory of Games. Cambridge University Press, Cambridge, UK, 1982. ( bibtex) (amazon: .co.uk .com .de) |
Bolouri, H. and Davidson, E. H. Transcriptional regulatory cascades in development: Initial rates, not steady state, determine network kinetics. In PNAS, 100 (16): 9371-9376, 2003. ( link) ( bibtex) |
Bray, D. Protein molecules as computational elements in living cells. In Nature, 376 (6538): 307-312, 1995. ( link) ( bibtex) |
Troisi, A., Wong, V. and Ratner, M. A. From The Cover: An agent-based approach for modeling molecular self-organization. In PNAS, 102 (2): 255-260, 2005. ( link) ( bibtex) |
Miller, J. F. Evolving a Self-Repairing, Self-Regulating, French Flag Organism. In Genetic and Evolutionary Computation - GECCO 2004, pages 129-139, Springer, 2004. ( file) ( bibtex) |
Federici, D. and Downing, K. Evolution and development of a multicellular organism: scalability, resilience, and neutral complexification. In Artif. Life, 12 (3): 381-409, 2006. ( link) ( bibtex) |
Salzberg, C. A graph-based reflexive artificial chemistry. In BioSystems, 87 (1): 1-12, 2007. ( link) ( bibtex) |
Benkoe, G., Flamm, C. and Stadler, P. F. A Graph-Based Toy Model of Chemistry. In Journal of Chemical Information and Computer Sciences, 43 (4): 1085-1093, 2003. ( file) ( bibtex) |
Paladugu, S.R., Chickarmane, V., Deckard, A., Frumkin, J.P., McCormack, M. and Sauro, H.M. In silico evolution of functional modules in biochemical networks. In Systems Biology, IEE Proceedings, 153 (4): 223-235, 2006. ( link) ( bibtex) |
Taylor, T. Creativity in evolution: individuals, interactions, and environments. In Creative evolutionary systems: 79-108, 2002. ( bibtex) |
Winfree, A. T. The Geometry of Biological Time. "Springer-Verlag",
address = "Berlin, Germany",
year = "1980",
ISBN = "0-387-09373-7 (New York). 3-540-09373-7 (Berlin)",
series = "Biomathematics", "Berlin, Germany",
year = "1980",
ISBN = "0-387-09373-7 (New York). 3-540-09373-7 (Berlin)",
series = "Biomathematics", "1980",
ISBN = "0-387-09373-7 (New York). 3-540-09373-7 (Berlin)",
series = "Biomathematics". ( bibtex) (amazon: .co.uk .com .de) |
Morowitz, H. J. Energy Flow in Biology. Academic Press, 1968. ( bibtex) (amazon: .co.uk .com .de) |
Hoppe, W. Biophysics. Springer Verlag, Berlin, 1983. ( bibtex) (amazon: .co.uk .com .de) |
Knippers, R. Molekulare Genetik. (no bibtex) (amazon: .co.uk .com .de) |
Popper, K. R. Alle Menschen sind Philosophen. (no bibtex) (amazon: .co.uk .com .de) |
Rickens, C. Die neuen Spiesser. (no bibtex) (amazon: .co.uk .com .de) |
Morowitz, H. J. Beginnings of Cellular Life. Yale University Press, 1992. ( bibtex) (amazon: .co.uk .com .de) |
Dequeant, M., Glynn, E., Gaudenz, K., Wahl, M., Chen, J., Mushegian, A. and Pourquie, O. A Complex Oscillating Network of Signaling Genes Underlies the Mouse Segmentation Clock. In Science, 314 (5805): 1595-1598, 2006. ( link) ( file) ( bibtex) |
Morowitz, H. and Smith, E. Energy flow and the organization of life. ( link) ( bibtex) |
Buchler, N. E., Gerland, U. and Hwa, T. On schemes of combinatorial transcription logic. In PNAS, 100 (9): 5136-5141, 2003. ( link) ( bibtex) |
Mangan, S., Itzkovitz, S., Zaslaver, A. and Alon, U. The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli. In J Mol Biol, 356 (5): 1073-1081, 2006. ( link) ( bibtex) |
Kashtan, N., Itzkovitz, S., Milo, R. and Alon, U. Topological Generalizations of network motifs. In Physical Review E, 70: 031909, 2004. ( file) ( bibtex) |
Conant, G. C. and Wagner, A. Convergent evolution of gene circuits. In Nature Genetics, 34 (3): 264-266, 2003. ( file) ( bibtex) |
Strindberg, A. Der Sohn einer Magd. (no bibtex) (amazon: .co.uk .com .de) |
Alon, U. An Introduction to Systems Biology. Chapman & Hall/CRC, 2006. ( bibtex) (amazon: .co.uk .com .de) |
Boell, H. Ansichten eines Clowns. (no bibtex) (amazon: .co.uk .com .de) |
Mulgan, G. Social Innovation: what it is, why it matters, how it can be accelerated. (no bibtex) (amazon: .co.uk .com .de) |
Kuo, P.D., Banzhaf, W. and Leier, A. Network topology and the evolution of dynamics in an artificial regulatory network model created by whole genome duplication and divergence. In Biosystems, 85 (3): 177-200, 2006. ( file) ( bibtex) |
Watson, R. A. Modular Interdependency in Complex Dynamical Systems. In Workshop Proceedings, 2002. ( link) ( bibtex) |
Polani, D., Dauscher, P. and Uthmann, T. On a Quantitative Measure for Modularity Based on Information
Theory. In ECAL, pages 393-402, 2005. ( file) ( bibtex) |
Strindberg, A. Heiraten (Giftas). (no bibtex) (amazon: .co.uk .com .de) |
Guimera, R. and Amaral, L. A. N. Functional cartography of complex metabolic networks. In Nature, 433: 895, 2005. ( link) ( file) ( bibtex) |
McKay, B. D. Computing automorphisms and canonical labellings
of graphs. In Combinatorial Mathematics, Springer-Verlag, 1978. ( bibtex) |
Popper, K. R. Auf der Suche nach einer besseren Welt. (no bibtex) (amazon: .co.uk .com .de) |
Brecht, B. Fear and Misery in the Third Reich. (no bibtex) (amazon: .co.uk .com .de) |
Mayo, A. E., Setty, Y., Shavit, S., Zaslaver, A. and Alon, U. Plasticity of the cis-Regulatory Input Function of a Gene. In PLoS Biol, 4 (4), 2006. ( link) ( bibtex) |
Kashtan, N. and Alon, U. Spontaneous evolution of modularity and network motifs. In Proc Natl Acad Sci U S A, 2005. ( link) ( bibtex) |
Bornholdt, S. and Schuster, H. G., ed. Handbook of Graphs and Networks - From the Genome to the Internet. Wiley-VCH, 2003. ( bibtex) (amazon: .co.uk .com .de) |
Davidson, E. H., Rast, J. P., Oliveri, P., Ransick, A., Calestani, C., Yuh, C., Minokawa, T., Amore, G., Hinman, V., Arenas-Mena, C., Otim, O., Brown, C. T., Livi, C. B., Lee, P. Y., Revilla, R., Rust, A. G., Pan, Z. j., Schilstra, M. J., Clarke, P. J. C., Arnone, M. I., Rowen, L., Cameron, R. A., McClay, D. R., Hood, L. and Bolouri, H. A Genomic Regulatory Network for Development. In Science, 295 (5560): 1669-1678, 2002. ( link) ( file) ( bibtex) |
Shen-Orr, S. S., Milo, R., Mangan, S. and Alon, U. Network motifs in the transcriptional regulation network of Escherichia coli. In Nat Genet, 31 (1): 64-68, 2002. ( link) ( bibtex) |
Wray, G. A., Hahn, M. W., Abouheif, E., Balhoff, J. P., Pizer, M., Rockman, M. V. and Romano, L. A. The Evolution of Transcriptional Regulation in Eukaryotes. In Mol Biol Evol, 20 (9): 1377-1419, 2003. ( link) ( file) ( bibtex) |
Wicken, J. S. Evolution, Thermodynamics and Information. (no bibtex) (amazon: .co.uk .com .de) |
Hinton, G. E. and Salakhutdinov, R. R. Reducing the Dimensionality of Data with Neural Networks. In Science, 313 (5786): 504-507, 2006. ( link) ( file) ( bibtex) |
Jain, S. and Krishna, S. Graph Theory and the Evolution of Autocatalytic Networks. ( link) ( bibtex) |
Schnitzler, A. Frau Berta Garlan. (no bibtex) (amazon: .co.uk .com .de) |
Schneider, E. D. and Sagan, D. Into the Cool : Energy Flow, Thermodynamics, and Life. University Of Chicago Press, 2005. ( bibtex) (amazon: .co.uk .com .de) |
Kay, J. J. Self-Organization In Living Systems. PhD Thesis, Department of Systems Design Engineering, University of Waterloo, Waterloo, Ontario, Canada, 1984. ( link) ( bibtex) |
Waechtershaeuser, G. Before enzymes and templates: theory of surface metabolism. In Microbiological Reviews, 52 (4): 452-484, 1988. ( link) ( bibtex) |
Suzuki, H., Ono, N. and Yuta, K. Several necessary conditions for the evolution of complex forms of life in an artificial environment. In Artif. Life, 9 (2): 153-174, 2003. ( link) ( bibtex) |
Tucholsky, K. Gesammelte Werke. (no bibtex) (amazon: .co.uk .com .de) |
Ziemke, T. and Thieme, M. Neuromodulation of Reactive Sensorimotor Mappings as a Short-Term Memory Mechanism in Delayed Response Tasks. In Adaptive Behavior, 10 (3-4): 185-199, 2002. ( link) ( file) ( bibtex) |
Saggie, K., Keinan, A. and Ruppin, E. Solving a Delayed Response Task with Spiking and McCulloch-Pitts Agents. In Advances in Artificial Life - Proceedings of the 7th European Conference on Artificial Life (ECAL), pages 199-208, Springer Verlag Berlin, Heidelberg, 2003. ( bibtex) |
Kim, D. Evolving internal memory for T-maze tasks in noisy environments. In Connection Science, 16 (3): 183-210, 2004. ( file) ( bibtex) |
Puig, M. Der Kuss der Spinnenfrau. (no bibtex) (amazon: .co.uk .com .de) |
Schneider, E.D. and Kay, J.J. Life as a Manifestation of the Second Law of Thermodynamics. In Mathematical and Computer Modelling, 19 (6-8): 25-48, 1994. ( link) ( bibtex) |
Neumann, J. v. Theory of Self-Reproducing Automata. University of Illinois Press, Urbana, Illinois, 1966. ( file) ( bibtex) (amazon: .co.uk .com .de) |
Nehaniv, C. L. and Rhodes, J. L. The evolution and understanding of hierarchical complexity in biology from an algebraic perspective. In Artificial Life, 6 (1): 45-67, 2000. ( bibtex) |
Maynard-Smith, J. and Szathmary, E. The Major Transitions in Evolution. New York: Oxford University Press, 1997. ( link) ( bibtex) (amazon: .co.uk .com .de) |
Unsoeld, A. Evolution kosmischer, biologischer und geistiger Strukturen. Wissenschaftliche Verlagsgesellschaft mbH Stuttgart, Stuttgart, 1983. ( bibtex) (amazon: .co.uk .com .de) |
Mueller, G. B. and Newman, S. A., ed. Origination of Organismal Form. MIT Press, 2003. ( bibtex) (amazon: .co.uk .com .de) |
Flake, G. W. The computational beauty of nature. MIT Press, Cambridge, MA, USA, 1998. ( bibtex) (amazon: .co.uk .com .de) |
Kim, J. T. LindEvol: Artificial Models for Natural Plant Evolution. In KI, 14 (1): 26-32, 2000. ( bibtex) |
Skusa, A., Banzhaf, W., Busch, J., Dittrich, P. and Ziegler, J. Kuenstliche Chemie. In KI, 14 (1): 12-19, 2000. ( bibtex) |
Mann, H. Die Vollendung des Koenigs Henri Quatre. (no bibtex) (amazon: .co.uk .com .de) |
Mann, H. Die Jugend des Koenigs Henri Quatre. (no bibtex) (amazon: .co.uk .com .de) |
Altenberg, L. Genome growth and the evolution of the genotype-phenotype map. In Banzhaf, W. and Eeckman, F. H., ed., Evolution as a Computational Process, Springer-Verlag, pages 205-259, 1995. ( link) ( file) ( bibtex) |
Verma, M., Rawool, S., Bhat, P. J. and Venkatesh, K.V. Biological significance of autoregulation through steady state analysis of genetic networks. In Biosystems, 84 (1): 39-48, 2006. ( file) ( bibtex) |
Mann, H. Professor Unrat. (no bibtex) (amazon: .co.uk .com .de) |
Gernhardt, R. Reim und Zeit. (no bibtex) (amazon: .co.uk .com .de) |
Crutchfield, J. P. Is anything ever new?: considering emergence. ( link) ( bibtex) |
Sole, R. V. and Valverde, S. Information Theory of Complex Networks: On Evolution and Architectural Constraints. ( file) ( bibtex) |
Crutchfield, J. P. and Schuster, P. Evolutionary Dynamics: Exploring the Interplay of Selection, Accident, Neutrality and Function. Oxford University Press, 2003. ( bibtex) (amazon: .co.uk .com .de) |
Zuse, K. Rechnender Raum. Vieweg & Sohn, Braunschweig, 1967. ( file) ( bibtex) (amazon: .co.uk .com .de) |
Schuster, P. and Stadler, P. Networks in molecular evolution. ( link) ( file) ( bibtex) |
Lodish, H. F., Baltimore, D., Berk, A., Zipursky, S. L., Matsudaira, P. and Darnell, J. E. Molecular Cell Biology. W. H. Freeman, New York, NY, USA, 2004. ( bibtex) (amazon: .co.uk .com .de) |
P. Lerena and M. Courant. Bio--machines. In Proceedings of Artificial Life,
volume V, Nara, Japan, 1996. ( link) ( file) ( bibtex) |
Winfree, A. T. The Timing of Biological Clocks. Scientific American Books, Inc., 1986. ( bibtex) (amazon: .co.uk .com .de) |
Lieberman, E., Hauert, C. and Nowak, M. A. Evolutionary dynamics on graphs. In Nature, 433 (7023): 312-316, 2005. ( file) ( bibtex) |
Walsh, J. B. How Often Do Duplicated Genes Evolve New Functions?. In Genetics, 139 (1): 421-428, 1995. ( file) ( bibtex) |
Ohta, T. Evolution by gene duplication and compensatory advantageous mutations. In Genetics, 120 (3): 841-847, 1988. ( file) ( bibtex) |
Lynch, M. and Conery, J. S. The Evolutionary Fate and Consequences of Duplicate Genes. In Science, 290 (5494): 1151-1155, 2000. ( file) ( bibtex) |
Camazine, S., Franks, N. R., Sneyd, J., Bonabeau, E., Deneubourg, J. and Theraula, G. Self-Organization in Biological Systems. Princeton University Press, Princeton, NJ, USA, 2001. ( bibtex) (amazon: .co.uk .com .de) |
Wolpert, D. H. and Macready, W. G. Coevolutionary free lunches. In IEEE Transactions on Evolutionary Computation, 9 (6): 721-735, 2005. ( bibtex) |
Hooper, S. and Berg, O. Duplication is more common among laterally transferred genes than among indigenous genes. In Genome Biology, 4 (8): R48, 2003. ( link) ( bibtex) |
Francino, P. P. An adaptive radiation model for the origin of new gene functions. In Nature Genetics, 37 (6): 573-578, 2005. ( file) ( bibtex) |
Buss, L. W. The Evolution of Individuality. Columbia University Press, New York, 1987. ( bibtex) (amazon: .co.uk .com .de) |
Carroll, S. B., Grenier, J. K. and Weatherbee, S. D. From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design. Blackwell Science, 2001. ( bibtex) (amazon: .co.uk .com .de) |
Wuensche, A. Genomic regulation modeled as a network with basins of attraction. In Procceedings of Pacic Symposium on Biocomputing'98, World Scientific, 1998. ( link) ( bibtex) |
Strogatz, S. H. Exploring complex networks. In Nature, 410: 268-276, 2001. ( file) ( bibtex) |
Sole, R. V., Ferrer-Cancho, R., Montoya, J. M. and Valverde, S. Selection, Tinkering, and Emergence in Complex Networks - Crossing the
Land of Tinkering. ( link) ( bibtex) |
Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D. and Alon, U. Network motifs: simple building blocks of complex networks. In Science, 298 (5594): 824-827, 2002. ( link) ( bibtex) |
S. A. Frank. Population and quantitative genetics of regulatory networks.
Journal of Theoretical Biology, 197:281--294, 1999. [Link]. ( link) ( bibtex) |
Albert, R. and Barabasi, A. Statistical Mechanics of Complex Networks. ( link) ( bibtex) |
Sordino, P., Hoeven, F. V. D. and Duboule, D. Hox Gene Expression in Teleost Fins and the Origin of Vertebrate Digits. In Nature, 375 (6533): 678-681, 1995. ( bibtex) |
Knoll, A. H. Life on a young planet : the first three billion years of evolution on Earth. (no bibtex) (amazon: .co.uk .com .de) |
Judson, H. F. The eighth day of creation: makers of the revolution in biology. CSHL Press, Plainview, N.Y., 1996. ( bibtex) (amazon: .co.uk .com .de) |
Kashtan, N. and Alon, U. From the Cover: Spontaneous evolution of modularity and network motifs. In PNAS, 102 (39): 13773-13778, 2005. ( link) ( file) ( bibtex) |
Sole, R. V., Fernandez, P. and Kauffman, S. A. Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion. In Int J Dev Biol, 47 (7-8): 685-693, 2003. ( file) ( bibtex) |
Kumar, S. and Bentley, P. J. Biologically Inspired Evolutionary Development. In ICES, pages 57-68, 2003. ( file) ( bibtex) |
Kumar, S. Multicellular Development, Self-Organization, and Differentiation. (no bibtex) (amazon: .co.uk .com .de) |
Carroll, S. B. Endless Forms Most Beautiful: The New Science of Evo Devo and the Making of the Animal Kingdom. W. W. Norton and Company, 2005. ( bibtex) (amazon: .co.uk .com .de) |
Kirschner, M. W. and Gerhart, J. C. The Plausibility of Life: Resolving Darwin's Dilemma. Yale University Press, 2005. ( bibtex) (amazon: .co.uk .com .de) |
Samjatin, J. Wir. (no bibtex) (amazon: .co.uk .com .de) |
Gregory, R. T. The Evolution of the Genome. Academic Press, 2004. ( bibtex) (amazon: .co.uk .com .de) |
Kumar, R., Raghavan, P., Rajagopalan, S., Sivakumar, D., Tomkins, A. and Upfal, E. Stochastic models for the Web graph. In FOCS '00: Proceedings of the 41st Annual Symposium on Foundations of Computer Science, pages 57, IEEE Computer Society, 2000. ( file) ( bibtex) |
Hughes, A. L. and Friedman, R. Gene Duplication and the Properties of Biological Networks. In Journal of Molecular Evolution, 61 (6): 758-764, 2005. ( bibtex) |
Arthur, W. The Origin of Animal Body Plans. Cambridge University Press, 2000. ( bibtex) (amazon: .co.uk .com .de) |
Ono, N. and Ikegami, T. Model of Self-Replicating Cell Capable of Self-Maintenance. In ECAL, pages 399-406, 1999. ( link) ( file) ( bibtex) |
Dittrich, P., Ziegler, J. and Banzhaf, W. Artificial Chemistries - A Review. In Artificial Life, 7 (3): 225-275, 2001. ( file) ( bibtex) |
Suzuki, H. An example of design optimization for high evolvability: string rewriting grammar. In BioSystems (69): 211-221, 2003. ( file) ( bibtex) |
Reggia, J. A., Lohn, J. D. and Chou, H. Self-Replicating Structures: Evolution, Emergence and Computation. In Artificial Life, 4 (3): 283-302, 1998. ( file) ( bibtex) |
Lohn, J. D. and Reggia, J. A. Automatic Discovery of Self-Replicating Structures in Cellular Automata. In IEEE Trans. on Evolutionary Computation, 1 (3): 165-178, 1997. ( file) ( bibtex) |
Kollmann, M., Lovdok, L., Bartholome, K., Timmer, J. and Sourjik, V. Design principles of a bacterial signalling network. In Nature, 438, 2005. ( bibtex) |
Geard, N. and Wiles, J. A Gene Network Model for Developing Cell Lineages. In Artificial Life, 11 (3): 249-268, 2005. ( file) ( bibtex) |
Ptashne, M. A Genetic Switch. Cell Press and Blackwell Science, 1992. ( bibtex) (amazon: .co.uk .com .de) |
Altenberg, L. The evolution of evolvability in genetic programming. In Advances in genetic programming: 47-74, 1994. ( file) ( bibtex) |
Pastor-Satorras, R., Smith, E. and Solé, R. V. Evolving Protein Interaction Networks through Gene Duplication. In Journal of Theoretical Biology (222): 199-210, 2003. ( file) ( bibtex) |
Gurdon, J. B. A community effect in animal development. In Nature (336): 772-774, 1988. ( bibtex) |
Calabretta, R., Nolfi, S., Parisi, D. and Wagner, G. P. A case study of the evolution of modularity: towards a bridge between evolutionary biology, artificial life, neuro- and cognitive science. In ALIFE: Proceedings of the sixth international conference on Artificial life, pages 275-284, MIT Press, 1998. ( file) ( bibtex) |
Bornholdt, S. and Sneppen, K. Neutral mutations and punctuated equilibrium in evolving genetic networks. In Physical Review Letters, 81: 236-23, 1998. ( file) ( bibtex) |
Solé, R. V, Fernández, P. and Kauffman, S. A. Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion. In Int. J. Dev. Biol., 47 (7-8): 685-693, 2003. ( file) ( bibtex) |
Revilla-i-Domingo, R. and Davidson, E. H. Developmental gene network analysis. In Int. J. Dev. Biol., 47 (7-8): 695-703, 2003. ( file) ( bibtex) |
Baguna, J. and Garcia-Fernandez, J. Evo-Devo: the long and winding road. In Int. J. Dev. Biol., 47 (7-8): 705-713, 2003. ( file) ( bibtex) |
Stewart, I. Does God Play Dice? The Mathematics of Chaos. Basil Blackwell, Oxford, 1989. ( bibtex) (amazon: .co.uk .com .de) |
Nehaniv, C. L., ed. Mathematical and Computational Biology: Computational Morphogenesis, Hierarchical Complexity and Digital Evolution. American Mathematical Society, Providence, Rhode Island, U. S. A., 1999. ( bibtex) (amazon: .co.uk .com .de) |
Sales, J. A. de, Martins, M. L. and Stariolo, D. A. Cellular automata model for gene networks. In Phyical Review E, 55: 3262-3270, 1997. ( file) ( bibtex) |
Vohradsky, J. Neural network model of gene expression. In The FASEB Journal, 15: 846-854, 2001. ( file) ( bibtex) |
Kauffman, S. A. The origins of Order: Self-Organization and
Selection in Evolution. Oxford University Press, 1993. ( bibtex) (amazon: .co.uk .com .de) |
Reil, T. Dynamics of Gene Expression in an Artificial Genome - Implications
for Biological and Artificial Ontogeny. In ECAL, pages 457-466, 1999. ( bibtex) |
Banzhaf, W. On the Dynamics of an Artificial Regulatory Network. In ECAL, pages 217-227, 2003. ( file) ( bibtex) |
Cervantes, M. de. Don Quixote. (no bibtex) (amazon: .co.uk .com .de) |
Banzhaf, W. On Evolutionary Design, Embodiment, and Artificial Regulatory
Networks. In Embodied Artificial Intelligence, pages 284-292, 2003. ( file) ( bibtex) |
Taylor, T. A Genetic Regulatory Network-Inspired Real-Time Controller for a Group of Underwater Robots. In Intelligent Autonomous Systems 8 (Proceedings of IAS8), pages 403-412, 2004. ( file) ( bibtex) |
Schilstra, M. J. and Bolouri, H. Modelling the Regulation of Gene Expression in Genetic Regulatory Networks. ( file) ( bibtex) |
Bongard, J. C. Evolving Modular Genetic Regulatory Networks. In Proceedings of the 2002 Congress on Evolutionary Computation CEC2002, pages 1872-1877, IEEE Press, 2002. ( file) ( bibtex) |
Bentley, P. Adaptive Fractal Gene Regulatory Networks for Robot Control. In Proceedings of Gecco 2004, 2004. ( file) ( bibtex) |
Schilstra, M. J. and Bolouri, H. The Logic of Gene Regulation. ( file) ( bibtex) |
Dostoevsky, F. Crime and Punishment. (no bibtex) (amazon: .co.uk .com .de) |
Jong, H. de, Gouz'e, J., Hernandez, C., Page, M., Sari, T. and Geiselmann, J. Hybrid Modeling and Simulation of Genetic Regulatory Networks:
A Qualitative Approach. In HSCC, pages 267-282, 2003. ( file) ( bibtex) |
Jong, H. de. Modeling and simulation of genetic regulatory systems: a literature review. In J Comput Biol, 9 (1): 67-103, 2002. ( link) ( bibtex) |
Kumar, S. A Developmental Genetics-Inspired Approach to Robot Control. In Proceedings of the Second Workshop On Self-Organization in Representations For Evolutionary Algorithms: Building complexity from simplicity, GECCO-2005, ACM Press, 2005. ( file) ( bibtex) |
Quick, T., Nehaniv, C. L., Dautenhahn, K. and Roberts, G. Evolving Embodied Genetic Regulatory Network-Driven Control
Systems. In ECAL, pages 266-277, 2003. ( file) ( bibtex) |
Mann, T. Bekenntnisse des Hochstaplers Felix Krull. (no bibtex) (amazon: .co.uk .com .de) |
Davidson, E. H. Genomic Regulatory Systems: Development and Evolution. Academic Press, 2001. ( bibtex) (amazon: .co.uk .com .de) |
SchrÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂödinger, E. Was ist Leben. Piper, 2004. ( bibtex) (amazon: .co.uk .com .de) |
Einstein, A. and Infeld, L. Die Evolution der Physik. Rowohlt, 1956. ( bibtex) (amazon: .co.uk .com .de) |
Sipper, M. Machine Nature: The Coming Age of Bio-Inspired Computing. McGraw-Hill, 2002. ( bibtex) (amazon: .co.uk .com .de) |
Zeilinger, A. Einsteins Schleier. Goldmann, 2003. ( bibtex) (amazon: .co.uk .com .de) |
Lesch, H. and MÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂüller, J. Big Bang, zweiter Akt. Goldmann, 2005. ( bibtex) (amazon: .co.uk .com .de) |
Renn, J. (Hrsg.). Albert Einstein - Ingenieur des Universums. (no bibtex) (amazon: .co.uk .com .de) |
Gould, S. J. Der Daumen des Panda. (no bibtex) (amazon: .co.uk .com .de) |
Rocha, L. M. and Hordijk, W. Material Representations: From the Genetic Code to the Evolution of Cellular Automata. In Artificial Life, 11 (1-2): 189-214, 2005. ( link) ( bibtex) |
West-Eberhard, M. J. Developmental Plasticity and Evolution. Oxford University Press, 2003. ( bibtex) (amazon: .co.uk .com .de) |
Nehaniv, C. L. Self-Replication, Evolvability and Asynchronicity in Stochastic Worlds. In Proc. 3rd Intl. Symp. on Stochastic Algorithms, Foundations and
Applicaitons
(SAGA 2005), 2005. ( bibtex) |
Basieux, P. Die Architektur der Mathematik. (no bibtex) (amazon: .co.uk .com .de) |
Stanley, K. O. and Miikkulainen, R. Evolving neural networks through augmenting topologies. In Evol. Comput., 10 (2): 99-127, 2002. ( bibtex) |
Riedl, R. Die Ordnung des Lebendigen. (no bibtex) (amazon: .co.uk .com .de) |
Dawkins, R. The extended phenotype: The gene as a unit of
selection. Oxford University Press, Oxford, 1983. ( bibtex) (amazon: .co.uk .com .de) |
Beer, R. D. Autopoiesis and cognition in the game of life. In Artif. Life, 10 (3): 309-326, 2004. ( bibtex) |
Wagner, G. P. and Altenberg, L. Complex Adaptations and the Evolution of Evolvability. In Evolution, 1996. ( link) ( bibtex) |
Dawkins, R. The Evolution of Evolvability. In ALIFE, pages 201-220, 1987. ( bibtex) |
Calabretta, R. and Wagner, S. N. a. D. P. a. G. P. Duplication of Modules Facilitates the Evolution of Functional
Specialization. In Artificial Life, 6 (1): 69-84, 2000. ( file) ( bibtex) |
Stanley, K. O. and Miikkulainen, R. A Taxonomy for artificial embryogeny. In Artif. Life, 9 (2): 93-130, 2003. ( bibtex) |
Tipler, P. A. Physik. (no bibtex) (amazon: .co.uk .com .de) |
Strogatz, S. Synchron. (no bibtex) (amazon: .co.uk .com .de) |
Howard, D. J. and Berlocher, S. H. Endless Forms: Species and Speciation. Oxford University Press, 1998. ( bibtex) (amazon: .co.uk .com .de) |
Hesse, H. Siddhartha. (no bibtex) (amazon: .co.uk .com .de) |
Hesse, H. Der Steppenwolf. (no bibtex) (amazon: .co.uk .com .de) |
Dawkins, R. The Blind Watchmaker. (no bibtex) (amazon: .co.uk .com .de) |
Cockburn, A. EvolutionsÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂökologie. (no bibtex) (amazon: .co.uk .com .de) |
Riedl, R. Kein Ende der Genesis. (no bibtex) (amazon: .co.uk .com .de) |
Rauchfuss, H. Chemische Evolution. (no bibtex) (amazon: .co.uk .com .de) |
Leonhard, W. Die Revolution entlÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂässt ihre Kinder. (no bibtex) (amazon: .co.uk .com .de) |
Keller, L., ed. Levels of selection in evolution. (no bibtex) (amazon: .co.uk .com .de) |
Futuyma, D. J. Evolutionary Biology. (no bibtex) (amazon: .co.uk .com .de) |
Riedl, R. and Wuketits, F. M., ed. Die EvolutionÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂäre Erkenntnistheorie (Bedingungen - LÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂösungen - Kontroversen). (no bibtex) (amazon: .co.uk .com .de) |
Krebs, J.R. and Davies, N.B. An introduction to behavioural ecology. (no bibtex) (amazon: .co.uk .com .de) |
Bischof, H.-J. Neuroethologie. (no bibtex) (amazon: .co.uk .com .de) |
Schlee, W. EinfÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂührung in die Spieltheorie. (no bibtex) (amazon: .co.uk .com .de) |
Riedl, R. Biologie der Erkenntnis. (no bibtex) (amazon: .co.uk .com .de) |
Eckhardt, B. Chaos. (no bibtex) (amazon: .co.uk .com .de) |
Mayr, E. What evolution is. (no bibtex) (amazon: .co.uk .com .de) |
Tomasello, M. and Call, J. Primate Cognition. (no bibtex) (amazon: .co.uk .com .de) |
Russell, B. Philosophie des Abendlandes. (no bibtex) (amazon: .co.uk .com .de) |
Rifkin, J. Das Ende der Arbeit und ihre Zukunft. (no bibtex) (amazon: .co.uk .com .de) |
Schindewolf, D. Wege und Irrwege des menschlichen Verstandes. (no bibtex) (amazon: .co.uk .com .de) |
Goldberg, D. E. Genetic Algorithms in Search, Optimization, and Machine Learning. Addison-Wesley Professional, 1989. ( bibtex) (amazon: .co.uk .com .de) |
Weiss, G., ed. Multiagent Systems. (no bibtex) (amazon: .co.uk .com .de) |
Nüsslein-Volhard, C. Das Werden des Lebens - Wie Gene die Entwicklung steuern. (no bibtex) (amazon: .co.uk .com .de) |
Montherlant, H. de. Die jungen MÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂädchen. (no bibtex) (amazon: .co.uk .com .de) |
Heisenberg, W. Der Teil und das Ganze. (no bibtex) (amazon: .co.uk .com .de) |
Erben, H. K. Die Entwicklung der Lebewesen - Spielregeln der Evolution. (no bibtex) (amazon: .co.uk .com .de) |
BÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂäck, T, Fogel, D B and Michalewicz, Z, ed. Evolutionary Computation 2. (no bibtex) (amazon: .co.uk .com .de) |
Hesse, H. Das Glasperlenspiel. (no bibtex) (amazon: .co.uk .com .de) |
BÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂäck, T., Fogel, D. B. and Michalewicz, T. Evolutionary Computation 1 (Basic Algorithms and Operators). (no bibtex) (amazon: .co.uk .com .de) |
Kumar, S. and Bentley, P.J., ed. On Growth, Form and Computers. (no bibtex) (amazon: .co.uk .com .de) |
Trappe, W. and Washington, L.C. Introduction to Cryptography with coding theory. (no bibtex) (amazon: .co.uk .com .de) |
Ibsen, H. Nora. (no bibtex) (amazon: .co.uk .com .de) |
Trappenberg, T. P. Fundamentals of Computational Neuroscience. (no bibtex) (amazon: .co.uk .com .de) |
Sigmund, K. Spielpl"ane. ( bibtex) |
Rousseau, J. J. Der Gesellschaftsvertrag - Contrat Social. (no bibtex) (amazon: .co.uk .com .de) |
Reichgelt, H. Knowledge Representation. (no bibtex) (amazon: .co.uk .com .de) |
Paulson, L. C. ML for the working programmer. (no bibtex) (amazon: .co.uk .com .de) |
Orwell, G. Mein Katalonien. (no bibtex) (amazon: .co.uk .com .de) |
Locke, J. Of Civil Government. (no bibtex) (amazon: .co.uk .com .de) |
Kierkegaard, S. Tagebuch des VerfÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂührers. (no bibtex) (amazon: .co.uk .com .de) |
Huch, R. Michael Bakunin und die Anarchie. (no bibtex) (amazon: .co.uk .com .de) |
Enzensberger, H. M. Der kurze Sommer der Anarchie. Buenaventura Durrutis Leben und Tod. (no bibtex) (amazon: .co.uk .com .de) |
DÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂörner, D. Bauplan fÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂür eine Seele. (no bibtex) (amazon: .co.uk .com .de) |
Diekmann, A. and Moser, R., ed. Evolution in den Natur-, Sozial- und Geisteswissenschaften. (no bibtex) (amazon: .co.uk .com .de) |
Baba, N. and Jain, L., ed. Computational Intelligence in Games. (no bibtex) (amazon: .co.uk .com .de) |
Waldrop, M.M. Inseln im Chaos. (no bibtex) (amazon: .co.uk .com .de) |
Lorenz, K. Das sogenannte BÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂöse. (no bibtex) (amazon: .co.uk .com .de) |
Langton, C.G. et. al., ed. Artificial Life II (proceedings). (no bibtex) (amazon: .co.uk .com .de) |
Langton, C.G., ed. Artificial Life (proceedings). (no bibtex) (amazon: .co.uk .com .de) |
Langdon, W.B. and Poli, R. Foundations of Genetic Programming. (no bibtex) (amazon: .co.uk .com .de) |
Gerhardt, M. and Schuster, H. Das digitale Universum. (no bibtex) (amazon: .co.uk .com .de) |
Deutsch, A., ed. Muster des Lebendigen. (no bibtex) (amazon: .co.uk .com .de) |
Beltrami, E. Von Krebsen und Kriminellen. (no bibtex) (amazon: .co.uk .com .de) |
Goethe, J.W. Faust. (no bibtex) (amazon: .co.uk .com .de) |
Stuhlmann-Laeisz, R. Philosophische Logik. (no bibtex) (amazon: .co.uk .com .de) |
Piaget, J. EinfÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂührung in die genetische Erkenntnistheorie. (no bibtex) (amazon: .co.uk .com .de) |
Frisch, M. Homo Faber. (no bibtex) (amazon: .co.uk .com .de) |
Rojas, R. Theorie der neuronalen Netze: Eine systematische Einführung. Springer, 1993. ( bibtex) (amazon: .co.uk .com .de) |
Haykin, S. Neural Networks - A comprehensive foundation. (no bibtex) (amazon: .co.uk .com .de) |
Wittgenstein, L. Tractatus logico-philosophicus. (no bibtex) (amazon: .co.uk .com .de) |
Varela, F. J. Kognitionswissenschaft - Kognitionstechnik. (no bibtex) (amazon: .co.uk .com .de) |
Russell, B. Das ABC der Relativitätstheorie. (no bibtex) (amazon: .co.uk .com .de) |
Orwell, G. Animal Farm. (no bibtex) (amazon: .co.uk .com .de) |
Nietzsche, F. Also sprach Zarathustra. (no bibtex) (amazon: .co.uk .com .de) |
Huizinga, J. Homo Ludens. (no bibtex) (amazon: .co.uk .com .de) |
Habermas, J. Erkenntnis und Interesse. (no bibtex) (amazon: .co.uk .com .de) |
Chomsky, N. Sprache und Geist. (no bibtex) (amazon: .co.uk .com .de) |
Chomsky, N. Reflexionen ÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂüber die Sprache. (no bibtex) (amazon: .co.uk .com .de) |
Chomsky, N. Aspekte der Syntax-Theorie. (no bibtex) (amazon: .co.uk .com .de) |
Huxley, A. Brave New World. (no bibtex) (amazon: .co.uk .com .de) |
Chomsky, N. ÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂÃÂber Erkenntnis und Freiheit. (no bibtex) (amazon: .co.uk .com .de) |
Burgess, A. A Clockwork Orange. (no bibtex) (amazon: .co.uk .com .de) |
Orwell, G. 1984. (no bibtex) (amazon: .co.uk .com .de) |
Defoe, D. Robinson Crusoe. (no bibtex) (amazon: .co.uk .com .de) |